Index of /mirrors/195.208.13.46/pub/unix/FreeBSD/3.5-STABLE/usr/ports/biology

[ICO]NameLast modifiedSizeDescription

[PARENTDIR]Parent Directory  -  
[   ]Makefile2002-01-25 14:58 1.1K 
[TXT]README.html2002-03-04 21:43 5.3K 
[DIR]artemis/2002-03-04 12:00 -  
[DIR]babel/2002-03-04 12:00 -  
[DIR]biojava/2002-03-04 12:00 -  
[DIR]chemeq/2002-03-04 12:00 -  
[DIR]clustalw/2002-03-04 12:00 -  
[DIR]coalesce/2002-03-04 12:00 -  
[DIR]deft/2002-03-04 12:00 -  
[DIR]dna-qc/2002-03-04 12:00 -  
[DIR]emboss/2002-03-04 12:00 -  
[DIR]fasta/2002-03-04 12:00 -  
[DIR]fasta3/2002-03-04 12:00 -  
[DIR]fastdnaml/2002-03-04 12:00 -  
[DIR]fluctuate/2002-03-04 12:00 -  
[DIR]gaussian98/2002-03-04 12:00 -  
[DIR]genpak/2002-03-04 12:00 -  
[DIR]gff2ps/2002-03-04 12:00 -  
[DIR]gperiodic/2002-03-04 12:00 -  
[DIR]grappa/2002-03-04 12:00 -  
[DIR]hmmer/2002-03-04 12:00 -  
[DIR]kinemage/2002-03-04 12:00 -  
[DIR]lamarc/2002-03-04 12:00 -  
[DIR]migrate/2002-03-04 12:00 -  
[DIR]molden/2002-03-04 12:00 -  
[DIR]mopac/2002-03-04 12:00 -  
[DIR]nab/2002-03-04 12:00 -  
[DIR]ncbi-toolkit/2002-03-04 12:00 -  
[DIR]nclever/2002-03-04 12:00 -  
[DIR]ortep3/2002-03-04 12:00 -  
[DIR]p5-AcePerl/2002-03-04 12:00 -  
[DIR]p5-bioperl-devel/2002-03-04 12:00 -  
[DIR]p5-bioperl/2002-03-04 12:00 -  
[DIR]paml/2002-03-04 12:00 -  
[DIR]phylip/2002-03-04 12:00 -  
[DIR]pkg/2002-03-04 12:00 -  
[DIR]platon/2002-03-04 12:00 -  
[DIR]povchem/2002-03-04 12:00 -  
[DIR]psi88/2002-03-04 12:00 -  
[DIR]py-biopython/2002-03-04 12:00 -  
[DIR]rasmol/2002-03-04 12:00 -  
[DIR]recombine/2002-03-04 12:00 -  
[DIR]ruby-bio/2002-03-04 12:00 -  
[DIR]seaview/2002-03-04 12:00 -  
[DIR]seqio/2002-03-04 12:00 -  
[DIR]sim4/2002-03-04 12:00 -  
[DIR]t_coffee/2002-03-04 12:00 -  
[DIR]tinker/2002-03-04 12:00 -  
[DIR]treeviewx/2002-03-04 12:00 -  
[DIR]xdrawchem/2002-03-04 12:00 -  
[DIR]xmolwt/2002-03-04 12:00 -  

The FreeBSD Ports Collection (biology)

The FreeBSD Ports Collection ("biology")


You are now in the directory "biology".

This is the one-line description for this category:


Biology


Here are the one-line descriptions for each items in this directory:


artemis-4.0: A DNA sequence viewer and annotation tool
babel-1.6_2: Converts among various molecular file formats
biojava-1.01: Open-source java tools for processing biological data
chemeq-1.10: Outputs LaTeX code for chemical reaction
clustalw-1.82: CLUSTAL W Multiple Sequence Alignment Program
coalesce-1.50: A program to fit population models
deft-2.2_1: Density functional molecular orbital calculation
dna-qc-1993.07.26: A quality control algorithm for DNA sequencing projects
emboss-2.2.0: A collection of open source tools for genetic sequence analysis
fasta-20.u66: A collection of programs for searching DNA and protein databases
fasta3-33.t08.d4: A collection of programs for searching DNA and protein databases, v3
fastdnaml-1.2.2: The faster variant of DNAML, makes phylogenetic trees using maximum likelihood
fluctuate-1.30: A program to fit population models
gaussian98-1.0.7: An ab-initio molecular orbital calculation program
genpak-0.26: GP is a set of small utilities to manipulate DNA sequences
gff2ps-0.97b: Converts gff-formated genomic data-sets to PostScript
gperiodic-1.3.3: Displays a periodic table of the elements
grappa-1.0.3: Genome Rearrangements Analysis and Phylogeny Software
hmmer-2.2.g: Profile hidden Markov models for biological sequence analysis
kinemage-5.79: A molecular visualization program with special functions
lamarc-2001.08.06: A package of programs for computing population parameters
migrate-1.2.4: A program to estimate population sizes and migration rates
molden-3.7: Display molecular orbitals and electron densities in 2D and 3D
mopac-7.02: Semi-empirical (MNDO, etc.) molecular orbital calculation
nab-4.3.2: This is nab (nucleic acid builder), a language for macromolecules
ncbi-toolkit-2001.12.20: NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
nclever-4.0: NClever is a character-based version of NCBI's Entrez program
ortep3-1.0.3_2: The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure
p5-AcePerl-1.82: Perl5 interface to the ACEDB genome database system
p5-bioperl-0.7.2: A collection of Perl modules for bioinformatics
p5-bioperl-devel-0.9.0: A collection of Perl modules for bioinformatics (developer's release)
paml-3.1: Phylogenetic Analysis by Maximum Likelihood (PAML)
phylip-3.6.a2.1: A Phylogeny Inference Package
platon-2001.03.09: Tool for viewing molecular/crystallographic structures
povchem-1.0_1: Simple yet powerful tool to generate POV from a PDB file
psi88-1.0: Plotting wavefunctions (molecular orbitals) in 3D
py15-biopython-1.00.a4: A collection of Python modules for bioinformatics
rasmol-2.7.2_1: Fast Molecular Visualization Program
recombine-1.40: A program to fit population models across sites
ruby-bio-0.3.3: Integrated environment for Bioinformatics written in Ruby
seaview-1.0: Multiple DNA sequence alignment editor
seqio-1.2.2: A set of C functions which can read/write biological sequence files
sim4-2001.12.30: An algorithm for aligning expressed DNA with genomic sequences
t_coffee-1.37: A multiple DNA or protein sequence alignment package
tinker-3.9_1: A general purpose molecular modelling package
treeviewx-0.2: A phylogenetic tree viewer
xdrawchem-0.99.7: Chemical drawing program
xmolwt-0.7: Calculate formula weight and percent of each element for a given formula


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